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1.
Am J Transplant ; 24(2S1): S10-S18, 2024 Feb.
Article in English | MEDLINE | ID: mdl-38431357

ABSTRACT

The OPTN/SRTR 2022 Annual Data Report presents the status of the solid organ transplant system in the United States from 2011 through 2022. Organ-specific chapters are presented for kidney, pancreas, liver, intestine, heart, and lung transplant. Each organ-specific chapter is organized to present waitlist information, donor information (both deceased and living, as appropriate), transplant information, and patient outcomes. Data pertaining to pediatric patients are generally presented separately from the adult data. In addition to the organ-specific chapters, the reader will find chapters dedicated to deceased organ donation, vascularized composite allografts, and the COVID-19 pandemic. The data presented in the Annual Data Report are descriptive in nature. In other words, most tables and figures present raw data without statistical adjustment for possible confounding or changes over time. Therefore, the reader should keep in mind the observational nature of the data when attempting to draw inferences before trying to ascribe a cause to any observed patterns or trends. This introduction provides a brief overview of trends in waitlist and transplant activity from 2012 through 2022. More detailed descriptions can be found in the respective organ-specific chapters.


Subject(s)
Tissue Donors , Tissue and Organ Procurement , Adult , Humans , Child , United States , Pandemics , Graft Survival , Resource Allocation , Waiting Lists
2.
Am J Transplant ; 24(2S1): S394-S456, 2024 Feb.
Article in English | MEDLINE | ID: mdl-38431363

ABSTRACT

For the first time since the COVID-19 pandemic, the annual number of lung transplants performed in the United States increased. The year 2022, encompassed in this report, marks the last full calendar year where the Lung Allocation Score was used for ranking transplant candidates based on their estimated transplant benefit and donor lung allocation in the United States. In March 2023, a major change in transplant allocation policy occurred with the implementation of the Composite Allocation Score. Transplant rates have increased over the past decade, although there is variability among age, diagnosis, racial and ethnic, and blood groups. Over half of candidates received a lung transplant within 3 months of placement on the waiting list, with nearly 75% of candidates accessing transplant by 1 year. Pretransplant mortality rates remained stable, with approximately 13% of lung transplant candidates dying or being removed from the waiting list within a year of listing. Posttransplant survival remained stable; however, variability exists by age, diagnosis, and racial and ethnic groups.


Subject(s)
Lung Transplantation , Tissue and Organ Procurement , Humans , United States/epidemiology , Pandemics , Treatment Outcome , Tissue Donors , Waiting Lists , Lung , Graft Survival
3.
Am J Transplant ; 24(2S1): S176-S265, 2024 Feb.
Article in English | MEDLINE | ID: mdl-38431359

ABSTRACT

In 2022, liver transplant activity continued to increase in the United States, with an all-time high of 9,527 transplants performed, representing a 52% increase over the past decade (2012-2022). Of these transplants, 8,924 (93.7%) were from deceased donors and 603 (6.3%) were from living donors. Liver transplant recipients were 94.5% adult and 5.5% pediatric. The overall size of the liver transplant waiting list contracted, with more patients being removed than added, although 10,548 adult patients still remained on the waiting list at the end of 2022. Alcohol-associated liver disease continued to be the leading diagnosis among both candidates and recipients, followed by metabolic dysfunction-associated steatohepatitis. Simultaneous liver-kidney transplant was the most common multiorgan combination, with 800 liver-kidney transplants performed in 2022; in addition, there were 303 new listings for kidney transplant via the safety net mechanism. Among adults added to the liver waiting list in 2021, 39.9% received a deceased donor liver transplant within 3 months; 45.7%, within 6 months; and 54.5%, within 1 year. Pretransplant mortality decreased to 12.3 deaths per 100 patient-years in 2022, although still 15.6% of removals from the waiting list were for death or being too sick for transplant. Graft and patient survival outcomes after deceased donor liver transplant improved, approximating pre-COVID-19 pandemic levels, with 5.1% mortality observed at 6 months; 6.8%, at 1 year; 12.7%, at 3 years; 19.8%, at 5 years; and 35.7%, at 10 years. Five-year graft and patient survival rates after living donor liver transplant exceeded those of deceased donor liver transplant. Candidates receiving model for end-stage liver disease exception points for hepatocellular carcinoma constituted 15.5% of transplants performed in 2022, with similar transplant rates and posttransplant outcomes compared to cases without hepatocellular carcinoma exception. In 2022, more pediatric liver transplant candidates were added to the waiting list and underwent transplant compared with either of the preceding 2 years, with an uptick in living donor liver transplant volume. Although pretransplant mortality has improved after the recent policy change prioritizing pediatric donors for pediatric recipients, still, in 2022, 50 children died or were removed from the waiting list for being too sick to undergo transplant. Posttransplant mortality among pediatric liver transplant recipients remained notable, with death occurring in 4.0% at 6 months, 6.0% at 1 year, 8.2% at 3 years, 9.8% at 5 years, and 13.9% at 10 years. Similar to adult living donor recipients, pediatric living donor recipients had better 5-year patient survival compared with deceased donor recipients.


Subject(s)
Carcinoma, Hepatocellular , End Stage Liver Disease , Liver Neoplasms , Liver Transplantation , Tissue and Organ Procurement , Adult , Humans , Child , United States/epidemiology , Living Donors , Pandemics , Severity of Illness Index , Tissue Donors , Waiting Lists , Graft Survival
4.
Am J Transplant ; 24(2S1): S489-S533, 2024 Feb.
Article in English | MEDLINE | ID: mdl-38431365

ABSTRACT

This chapter updates the COVID-19 chapter from the 2021 Annual Data Report with trends through November 12, 2022, and introduces trends in recovery and use of organs from donors with a positive COVID-19 test. Posttransplant mortality and graft failure, which remained a concern in all organs at the last report due to the Omicron variant wave, have returned to lower levels in the most recent available data through November 2022. Use of organs from donors with a positive COVID-19 test has grown, particularly after the first year of the pandemic. Mortality due to COVID-19 should continue to be monitored, but most other measures have sustained their recovery and may now be responding more to changes in policy than to ongoing concerns with COVID-19.


Subject(s)
COVID-19 , Tissue and Organ Procurement , Humans , United States/epidemiology , Graft Survival , Waiting Lists , SARS-CoV-2 , Tissue Donors
5.
Am J Transplant ; 23(2 Suppl 1): S379-S442, 2023 02.
Article in English | MEDLINE | ID: mdl-37132345

ABSTRACT

The number of lung transplants has continued to decline since 2020, a period that coincides with the onset of the COVID-19 pandemic. Lung allocation policy continues to undergo considerable change in preparation for adoption of the Composite Allocation Score system in 2023, beginning with multiple adaptations to the calculation of the Lung Allocation Score that occurred in 2021. The number of candidates added to the waiting list increased after a decline in 2020, while waitlist mortality has increased slightly with a decreased number of transplants. Time to transplant continues to improve, with 38.0% of candidates waiting fewer than 90 days for a transplant. Posttransplant survival remains stable, with 85.3% of transplant recipients surviving to 1 year; 67%, to 3 years; and 54.3%, to 5 years.


Subject(s)
COVID-19 , Tissue and Organ Procurement , Humans , United States/epidemiology , Tissue Donors , Pandemics , Graft Survival , Resource Allocation , Treatment Outcome , COVID-19/epidemiology , Waiting Lists , Lung
6.
Am J Transplant ; 23(2 Suppl 1): S178-S263, 2023 02.
Article in English | MEDLINE | ID: mdl-37132348

ABSTRACT

In 2021, liver transplant volume continued to grow, with a record 9,234 transplants performed in the United States, 8,665 (93.8%) from deceased donors and 569 (6.2%) from living donors. There were 8,733 (94.6%) adult and 501 (5.4%) pediatric liver transplant recipients. An increase in the number of deceased donor livers corresponded to an increase in the overall transplant rate and shorter waiting times, although still 10.0% of livers that were recovered were not transplanted. Alcohol-associated liver disease was the leading indication for both waitlist registration and liver transplant in adults, outpacing nonalcoholic steatohepatitis, while biliary atresia remained the leading indication for children. Related to allocation policy changes implemented in 2019, the proportion of liver transplants performed for hepatocellular carcinoma has decreased. Among adult candidates listed for liver transplant in 2020, 37.7% received a deceased donor liver transplant within 3 months, 43.8% within 6 months, and 53.3% within 1 year. Pretransplant mortality improved for children following implementation of acuity circle-based distribution. Short-term graft and patient survival outcomes up to 1 year worsened for adult deceased and living donor liver transplant recipients, which is a reversal of previous trends and coincided with the onset of the COVID-19 pandemic in early 2020. Longer-term outcomes among adult deceased donor liver transplant recipients were unaffected, with overall posttransplant mortality rates of 13.3% at 3 years, 18.6% at 5 years, and 35.9% at 10 years. Pretransplant mortality improved for children following implementation of acuity circle-based distribution and prioritization of pediatric donors to pediatric recipients in 2020. Pediatric living donor recipients had superior graft and patient survival outcomes compared with deceased donor recipients at all time points.


Subject(s)
COVID-19 , Liver Diseases, Alcoholic , Liver Neoplasms , Liver Transplantation , Tissue and Organ Procurement , Adult , Child , Humans , United States/epidemiology , Living Donors , Pandemics , Graft Survival , COVID-19/epidemiology , Tissue Donors , Waiting Lists
7.
Am J Transplant ; 23(2 Suppl 1): S12-S20, 2023 02.
Article in English | MEDLINE | ID: mdl-37132351

ABSTRACT

The OPTN/SRTR 2021 Annual Data Report presents the status of the solid organ transplantation system in the United States from 2010 through 2021. Organ-specific chapters are presented for kidney, pancreas, liver, intestine, heart, and lung transplant. Each organ-specific chapter is organized to present waitlist information, donor information (both deceased and living, as appropriate), transplant information, and patient outcomes. Data pertaining to pediatric patients are generally presented separately from the adult data. In addition to the organ-specific chapters, you will find chapters dedicated to deceased organ donation, vascularized composite allograft, and the COVID-19 pandemic. The data presented in the Annual Data Report are descriptive in nature. In other words, most tables and figures present raw data without statistical adjustment for possible confounding or changes over time. Therefore, the reader should keep in mind the observational nature of the data when attempting to draw inferences before trying to ascribe a cause to any observed patterns or trends. This introduction provides a brief overview of trends in waitlist and transplant activity. More detailed descriptions can be found in the respective organ-specific chapters.


Subject(s)
COVID-19 , Tissue and Organ Procurement , Adult , Humans , Child , United States , Tissue Donors , Pandemics , Graft Survival , COVID-19/epidemiology
8.
Clin Transplant ; 35(7): e14337, 2021 07.
Article in English | MEDLINE | ID: mdl-33955070

ABSTRACT

Major gaps remain in our understanding of antibody-mediated rejection (AMR) after kidney transplant. We examined the incidence, risk factors, response to treatment, and effects on outcomes of AMR at seven transplant programs in the long-term Deterioration of Kidney Allograft Function prospective study cohort. Among 3131 kidney recipients, there were 194 observed AMR cases (6.2%) during (mean ± SD) 4.85 ± 1.86 years of follow-up. Time to AMR was 0.97 ± 1.17 (median, 0.48) years. Risk factors for AMR included younger recipient age, human leukocyte antigen DR mismatches, panel-reactive antibody >0%, positive T- or B-cell cross-match, and delayed graft function. Compared with no AMR, the adjusted time-dependent hazard ratio for death-censored graft failure is 10.1 (95% confidence interval, 6.5-15.7) for all AMR patients, 4.0 (2.5, 9.1) for early AMR (<90 days after transplant), and 24.0 (14.0-41.1) for late AMR (≥90 days after transplant). Patients were treated with different therapeutic combinations. Of 194 kidney transplant recipients with AMR, 50 (25.8%) did not respond to treatment, defined as second AMR within 100 days or no improvement in estimated glomerular filtration rate by 42 days. Long-term outcomes after AMR are poor, regardless of the initial response to treatment. Better prevention and new therapeutic strategies are needed to improve long-term allograft survival.


Subject(s)
Graft Rejection , Graft Survival , Allografts , Cohort Studies , Graft Rejection/epidemiology , Graft Rejection/etiology , Humans , Incidence , Kidney , Prospective Studies , Risk Factors
9.
J Clin Pharmacol ; 61(8): 1035-1044, 2021 08.
Article in English | MEDLINE | ID: mdl-33512723

ABSTRACT

Genetic variation in the CYP3A4 and CYP3A5 (CYP3A4/5) genes, which encode the key enzymes in tacrolimus metabolism, is associated with tacrolimus clearance and dose requirements. Tacrolimus has a narrow therapeutic index with high intra- and intersubject variability, in part because of genetic variation. High tacrolimus clearance and low trough concentration are associated with a greater risk for rejection, whereas high troughs are associated with calcineurin-induced toxicity. The objective of this study was to develop a model of tacrolimus clearance with a dosing equation accounting for genotypes and clinical factors in adult kidney transplant recipients of European ancestry that could preemptively guide dosing. Recipients receiving immediate-release tacrolimus for maintenance immunosuppression from 2 multicenter studies were included. Participants in the GEN03 study were used for tacrolimus model development (n = 608 recipients) and was validated by prediction performance in the DeKAF Genomics study (n = 1361 recipients). Nonlinear mixed-effects modeling was used to develop the apparent oral tacrolimus clearance (CL/F) model. CYP3A4/5 genotypes and clinical covariates were tested for their influence on CL/F. The predictive performance of the model was determined by assessing the bias (median prediction error [ME] and median percentage error [MPE]) and the precision (root median squared error [RMSE]) of the model. CYP3A5*3, CYP3A4*22, corticosteroids, calcium channel blocker and antiviral drug use, age, and diabetes significantly contributed to the interindividual variability of oral tacrolimus apparent clearance. The bias (ME, MPE) and precision (RMSE) of the final model was good, 0.49 ng/mL, 6.5%, and 3.09 ng/mL, respectively. Prospective testing of this equation is warranted.


Subject(s)
Immunosuppressive Agents/administration & dosage , Immunosuppressive Agents/pharmacokinetics , Kidney Transplantation , Tacrolimus/administration & dosage , Tacrolimus/pharmacokinetics , Adolescent , Adult , Age Factors , Aged , Aged, 80 and over , Comorbidity , Cytochrome P-450 CYP3A/genetics , Drug Interactions , Female , Genotype , Humans , Male , Metabolic Clearance Rate , Middle Aged , Models, Biological , Transplant Recipients , White People , Young Adult
10.
Am J Transplant ; 21(1): 222-228, 2021 01.
Article in English | MEDLINE | ID: mdl-32306489

ABSTRACT

The current pediatric end-stage liver disease (PELD) score underestimates pediatric waitlist mortality. Children frequently require PELD exception points to achieve appropriate priority ranking. We developed a new PELD score using serum sodium, creatinine, and updated original PELD components to more accurately rank children and equalize children's mortality risk with the age-standardized mortality rate of adults. We included children aged younger than 12 years with chronic liver disease, listed for deceased donor livers January 1, 2005-December 31, 2017. Pediatric candidates (n = 5111) were followed from listing to the earliest of waitlist mortality (death or removal from the list due to being too sick to undergo transplant, n = 339) or 180 days. We incorporated linear splines for the current components of PELD and added sodium and creatinine to the equation. The updated PELD-Na-Cr had a cross-validated AUC ROC of 0.854, vs 0.799 for the original PELD. PELD-Na-Cr required 9.44 additional points to equalize children's mortality risk with the age-standardized mortality rate of adults. PELD-Na-Cr better ordered the sickest children and should better prioritize children relative to adults. As a result, PELD-Na-Cr could increase pediatric transplant rates and reduce pediatric liver transplant waitlist mortality.


Subject(s)
End Stage Liver Disease , Liver Diseases , Liver Transplantation , Adult , Child , Child, Preschool , End Stage Liver Disease/surgery , Humans , Severity of Illness Index , Waiting Lists
11.
J Clin Pharm Ther ; 45(6): 1457-1465, 2020 Dec.
Article in English | MEDLINE | ID: mdl-32662547

ABSTRACT

WHAT IS KNOWN AND OBJECTIVE: Pharmacogenomic biomarkers are now used in many clinical care settings and represent one of the successes of precision medicine. Genetic variants are associated with pharmacokinetic and pharmacodynamic changes leading to medication adverse effects and changes in clinical response. Actionable pharmacogenomic variants are common in transplant recipients and have implications for medications used in transplant, but yet are not broadly incorporated into practice. METHODS: From the Clinical Pharmacogenetics Implementation Consortium and Dutch Pharmacogenetics Working Group guidelines, and PharmGKB databases, 12 pharmacogenomic genes with 30 variants were selected and used to create diplotypes and actionable pharmacogenomic phenotypes. A total of 853 kidney allograft recipients who had genomic information available from a genome-wide association study were included. RESULTS: Each recipient had at least one actionable pharmacogenomic diplotype/phenotype, whereas the majority (58%) had three or four actionable diplotypes/phenotypes and 17.4% had five or more among the 12 genes. The participants carried actionable diplotypes/phenotypes for multiple medications, including tacrolimus, azathioprine, clopidogrel, warfarin, simvastatin, voriconazole, antidepressants and proton-pump inhibitors. WHAT IS NEW AND CONCLUSION: Pharmacogenomic variants are common in transplant recipients, and transplant recipients receive medications that have actionable variants. CLINICAL TRIAL: Genomics of Transplantation, clinicaltrials.gov (NCT01714440).


Subject(s)
Kidney Transplantation/methods , Pharmacogenetics/methods , Pharmacogenomic Variants , Adult , Female , Genome-Wide Association Study , Humans , Male , Middle Aged , Phenotype , Prospective Studies
12.
Am J Transplant ; 19(10): 2795-2804, 2019 10.
Article in English | MEDLINE | ID: mdl-30953600

ABSTRACT

Tacrolimus trough and dose requirements vary dramatically between individuals of European and African American ancestry. These differences are less well described in other populations. We conducted an observational, prospective, multicenter study from which 2595 kidney transplant recipients of European, African, Native American, and Asian ancestry were studied for tacrolimus trough, doses, and genetic determinants of metabolism. We studied the well-known variants and conducted a CYP3A4/5 gene-wide analysis to identify new variants. Daily doses, and dose-normalized troughs were significantly different between the four groups (P < .001). CYP3A5*3 (rs776746) was associated with higher dose-normalized tacrolimus troughs in all groups but occurred at different allele frequencies and had differing effect sizes. The CYP3A5*6 (rs10264272) and *7 (rs413003343) variants were only present in African Americans. CYP3A4*22 (rs35599367) was not found in any of the Asian ancestry samples. We identified seven suggestive variants in the CYP3A4/5 genes associated with dose-normalized troughs in Native Americans (P = 1.1 × 10-5 -8.8 × 10-6 ) and one suggestive variant in Asian Americans (P = 5.6 × 10-6 ). Tacrolimus daily doses and dose-normalized troughs vary significantly among different ancestry groups. We identified potential new variants important in Asians and Native Americans. Studies with larger populations should be conducted to assess the importance of the identified suggestive variants.


Subject(s)
Cytochrome P-450 CYP3A/genetics , Ethnicity/statistics & numerical data , Kidney Failure, Chronic/metabolism , Kidney Transplantation/methods , Polymorphism, Single Nucleotide , Tacrolimus/metabolism , Female , Follow-Up Studies , Gene Frequency , Genotype , Humans , Immunosuppressive Agents/administration & dosage , Immunosuppressive Agents/metabolism , Kidney Failure, Chronic/ethnology , Kidney Failure, Chronic/genetics , Kidney Failure, Chronic/therapy , Male , Middle Aged , Prognosis , Prospective Studies , Tacrolimus/administration & dosage
13.
Am J Transplant ; 19(8): 2262-2273, 2019 08.
Article in English | MEDLINE | ID: mdl-30920136

ABSTRACT

Genetic variation across the human leukocyte antigen loci is known to influence renal-transplant outcome. However, the impact of genetic variation beyond the human leukocyte antigen loci is less clear. We tested the association of common genetic variation and clinical characteristics, from both the donor and recipient, with posttransplant eGFR at different time-points, out to 5 years posttransplantation. We conducted GWAS meta-analyses across 10 844 donors and recipients from five European ancestry cohorts. We also analyzed the impact of polygenic risk scores (PRS), calculated using genetic variants associated with nontransplant eGFR, on posttransplant eGFR. PRS calculated using the recipient genotype alone, as well as combined donor and recipient genotypes were significantly associated with eGFR at 1-year posttransplant. Thirty-two percent of the variability in eGFR at 1-year posttransplant was explained by our model containing clinical covariates (including weights for death/graft-failure), principal components and combined donor-recipient PRS, with 0.3% contributed by the PRS. No individual genetic variant was significantly associated with eGFR posttransplant in the GWAS. This is the first study to examine PRS, composed of variants that impact kidney function in the general population, in a posttransplant context. Despite PRS being a significant predictor of eGFR posttransplant, the effect size of common genetic factors is limited compared to clinical variables.


Subject(s)
Genetic Markers , Genetic Variation , Graft Rejection/diagnosis , Kidney Transplantation/adverse effects , Kidney/physiopathology , Postoperative Complications/diagnosis , Risk Assessment/methods , Adult , Europe/epidemiology , Female , Follow-Up Studies , Genome-Wide Association Study , Glomerular Filtration Rate , Graft Rejection/epidemiology , Graft Rejection/genetics , Graft Survival , Humans , Kidney Failure, Chronic/genetics , Kidney Failure, Chronic/surgery , Kidney Function Tests , Living Donors/statistics & numerical data , Male , Middle Aged , Postoperative Complications/epidemiology , Postoperative Complications/genetics , Prognosis , Retrospective Studies , Risk Factors , Transplant Recipients/statistics & numerical data
14.
Transplantation ; 103(8): 1591-1602, 2019 08.
Article in English | MEDLINE | ID: mdl-30801535

ABSTRACT

BACKGROUND: Identifying kidney allograft recipients who are predisposed to acute rejection (AR) could allow for optimization of clinical treatment to avoid rejection and prolong graft survival. It has been hypothesized that a part of this predisposition is caused by the inheritance of specific genetic variants. There are many publications reporting a statistically significant association between a genetic variant, usually in the form of a single-nucleotide polymorphism (SNP), and AR. However, there are additional publications reporting a lack of this association when a different cohort of recipients is analyzed for the same single-nucleotide polymorphism. METHODS: In this report, we attempted to validate 75 common genetic variants, which have been previously reported to be associated with AR, using a large kidney allograft recipient cohort of 2390 European Americans and 482 African Americans. RESULTS: Of those variants tested, only 1 variant, rs2910164, which alters the expression of the microRNA MIR146A, was found to exhibit a significant association within the African American cohort. Suggestive variants were found in the genes CTLA and TLR4. CONCLUSIONS: Our results show that most variants previously reported to be associated with AR were not validated in our cohort. This shows the importance of validation when reporting the associations with complex clinical outcomes such as AR. Additional work will need to be done to understand the role of MIR146A in the risk of AR in kidney allograft recipients.


Subject(s)
Graft Rejection/genetics , Kidney Transplantation , MicroRNAs/genetics , Polymorphism, Single Nucleotide , RNA/genetics , Transplant Recipients , Acute Disease , Female , Genotype , Graft Rejection/metabolism , Graft Survival , Humans , Kidney Failure, Chronic/surgery , Male , MicroRNAs/metabolism , Middle Aged , Transplantation, Homologous
15.
Transplantation ; 103(6): 1131-1139, 2019 06.
Article in English | MEDLINE | ID: mdl-30801552

ABSTRACT

BACKGROUND: The immunosuppressants tacrolimus and mycophenolate are important components to the success of organ transplantation, but are also associated with adverse effects, such as nephrotoxicity, anemia, leukopenia, and new-onset diabetes after transplantation. In this report, we attempted to identify genetic variants which are associated with these adverse outcomes. METHODS: We performed a genome-wide association study, using a genotyping array tailored specifically for transplantation outcomes containing 722 147 single nucleotide polymorphisms, and 2 cohorts of kidney allograft recipients-a discovery cohort and a confirmation cohort-to identify and then confirm genetic variants associated with immunosuppressant pharmacokinetics and adverse outcomes. RESULTS: Several genetic variants were found to be associated with tacrolimus trough concentrations. We did not confirm variants associated with the other phenotypes tested although several suggestive variants were identified. CONCLUSIONS: These results show that adverse effects associated with tacrolimus and mycophenolate are complex, and recipient risk is not determined by a few genetic variants with large effects with but most likely are due to many variants, each with small effect sizes, and clinical factors.


Subject(s)
Immunosuppressive Agents/adverse effects , Immunosuppressive Agents/pharmacokinetics , Kidney Transplantation , Mycophenolic Acid/adverse effects , Mycophenolic Acid/pharmacokinetics , Pharmacogenomic Variants , Polymorphism, Single Nucleotide , Tacrolimus/adverse effects , Tacrolimus/pharmacokinetics , Adult , Aged , Anemia/chemically induced , Anemia/genetics , Diabetes Mellitus/chemically induced , Diabetes Mellitus/genetics , Female , Genome-Wide Association Study , Genotype , Graft Rejection/immunology , Graft Rejection/prevention & control , Graft Survival/drug effects , Humans , Immunosuppressive Agents/administration & dosage , Kidney Diseases/chemically induced , Kidney Diseases/genetics , Kidney Transplantation/adverse effects , Leukopenia/chemically induced , Leukopenia/genetics , Male , Middle Aged , Mycophenolic Acid/administration & dosage , Risk Assessment , Risk Factors , Tacrolimus/administration & dosage , United States , Young Adult
16.
Pharmacogenomics J ; 19(4): 375-389, 2019 08.
Article in English | MEDLINE | ID: mdl-30442921

ABSTRACT

An extreme phenotype sampling (EPS) model with targeted next-generation sequencing (NGS) identified genetic variants associated with tacrolimus (Tac) metabolism in subjects from the Deterioration of Kidney Allograft Function (DeKAF) Genomics cohort which included 1,442 European Americans (EA) and 345 African Americans (AA). This study included 48 subjects separated into 4 groups of 12 (AA high, AA low, EA high, EA low). Groups were selected by the extreme phenotype of dose-normalized Tac trough concentrations after adjusting for common genetic variants and clinical factors. NGS spanned > 3 Mb of 28 genes and identified 18,661 genetic variants (3961 previously unknown). A group of 125 deleterious variants, by SIFT analysis, were associated with Tac troughs in EAs (burden test, p = 0.008), CYB5R2 was associated with Tac troughs in AAs (SKAT, p = 0.00079). In CYB5R2, rs61733057 (increased allele frequency in AAs) was predicted to disrupt protein function by SIFT and PolyPhen2 analysis. The variants merit further validation.


Subject(s)
Genetic Variation/genetics , Graft Rejection/genetics , Immunosuppressive Agents/metabolism , Tacrolimus/metabolism , Adolescent , Adult , Black or African American/genetics , Aged , Aged, 80 and over , Cytochromes b5/genetics , Female , Gene Frequency/genetics , Genotype , Graft Rejection/prevention & control , High-Throughput Nucleotide Sequencing/methods , Humans , Immunosuppressive Agents/therapeutic use , Kidney Transplantation/methods , Male , Middle Aged , Phenotype , Prospective Studies , Tacrolimus/therapeutic use , Transplant Recipients , White People/genetics , Young Adult
17.
Clin Transplant ; 32(12): e13436, 2018 12.
Article in English | MEDLINE | ID: mdl-30372560

ABSTRACT

BACKGROUND: We performed a study to identify differences in the urinary microbiome associated with chronic allograft dysfunction (CAD) and compared the urinary microbiome of male and female transplant recipients with CAD. METHODS: This case-control study enrolled 67 patients within the Deterioration of Kidney Allograft Function (DeKAF) Genomics cohort at two transplant centers. CAD was defined as a greater than 25% rise in serum creatinine relative to a 3 month post-transplant baseline. Urine samples from patients with and without CAD were analyzed using 16S V4 bacterial ribosomal DNA sequences. RESULTS: Corynebacterium was more prevalent in female and male patients with CAD compared to non-CAD female patients (P = 0.0005). A total 21 distinct Operational Taxonomic Unit (OTUs) were identified as significantly different when comparing CAD and non-CAD patients using Kruskal-Wallis (P < 0.01). A subset analysis of female patients with CAD compared to non-CAD females identified similar differentially abundant OTUs, including the genera Corynebacterium and Staphylococcus (Kruskal-Wallis; P = 0.01; P = 0.004, respectively). Male CAD vs female CAD analysis showed greater abundance of phylum Proteobacteria in males. CONCLUSION: There were differences in the urinary microbiome when comparing female and male CAD patients with their female non-CAD counterparts and these differences persisted in the subset analysis limited to female patients only.


Subject(s)
Bacteriuria/urine , Graft Rejection/urine , Kidney Failure, Chronic/surgery , Kidney Transplantation/adverse effects , Microbiota , Urine/microbiology , Allografts , Bacteriuria/diagnosis , Bacteriuria/microbiology , Case-Control Studies , Female , Follow-Up Studies , Graft Rejection/diagnosis , Graft Rejection/microbiology , Graft Survival , Humans , Male , Middle Aged , Postoperative Complications , Prognosis , Prospective Studies , RNA, Ribosomal, 16S/genetics , Risk Factors , Transplant Recipients
18.
Clin Transplant ; 32(12): e13424, 2018 12.
Article in English | MEDLINE | ID: mdl-30318646

ABSTRACT

BACKGROUND: Suboptimal immunosuppression after kidney transplantation contributes to toxicity and loss of efficacy. Little is known regarding the impact of intra-patient variability of tacrolimus (TAC) doses and troughs in the early post-transplant period or the influence of genetic variants on variability. METHODS: Coefficients of variation (CV) of TAC troughs and doses of 1226 European American (EA) and 246 African American (AA) adult recipients enrolled in DeKAF Genomics were compared for association with acute rejection and graft failure. Additionally, the influence of recipients' number of CYP3A5 loss-of-function alleles was assessed. RESULTS: Acute rejection was associated with greater CV of dose in AA (P < 0.001) and EA recipients (P = 0.012). Graft failure was associated with a greater CV of dose (P = 0.022) and trough (P < 0.001) in AA, and higher CV of trough (P = 0.024) in EA recipients. In EA, CYP3A5 loss-of-function alleles were associated with decreased CV of trough (P = 0.0042) and increased CV of dose (P < 0.0001). CONCLUSION: CYP3A5 loss-of-function alleles influence intra-patient TAC trough and dose variability. High variability of TAC dose increases risk of acute rejection. High variability of TAC trough increases risk of graft failure. Early clinical recognition of TAC dose and trough variability may improve patient management and outcomes.


Subject(s)
Black or African American/genetics , Cytochrome P-450 CYP3A/genetics , Graft Rejection/epidemiology , Graft Survival/drug effects , Kidney Transplantation/adverse effects , Tacrolimus/therapeutic use , White People/genetics , Adolescent , Adult , Aged , Aged, 80 and over , Dose-Response Relationship, Drug , Female , Follow-Up Studies , Genotype , Graft Rejection/drug therapy , Graft Rejection/etiology , Graft Survival/genetics , Humans , Immunosuppressive Agents/therapeutic use , Incidence , Kidney Failure, Chronic/surgery , Male , Middle Aged , Minnesota/epidemiology , Postoperative Complications , Prognosis , Prospective Studies , Risk Factors , Young Adult
19.
Pharmacogenomics ; 19(3): 175-184, 2018 02.
Article in English | MEDLINE | ID: mdl-29318894

ABSTRACT

AIM: Multiple genetic variants have been associated with variation in tacrolimus (TAC) trough concentrations. Unfortunately, additional studies do not confirm these associations, leading one to question if a reported association is accurate and reliable. We attempted to validate 44 published variants associated with TAC trough concentrations. MATERIALS & METHODS: Genotypes of the variants in our cohort of 1923 kidney allograft recipients were associated with TAC trough concentrations. RESULTS: Only variants in CYP3A4 and CYP3A5 were significantly associated with variation in TAC trough concentrations in our validation. CONCLUSION: There is no evidence that common variants outside the CYP3A4 and CYP3A5 loci are associated with variation in TAC trough concentrations. In the future rare variants may be important and identified using DNA sequencing.


Subject(s)
Immunocompromised Host/genetics , Immunosuppressive Agents/blood , Kidney Transplantation , Polymorphism, Single Nucleotide , Tacrolimus/blood , Black or African American/genetics , Cohort Studies , Cytochrome P-450 CYP3A/genetics , Humans , Immunosuppressive Agents/administration & dosage , Immunosuppressive Agents/therapeutic use , Tacrolimus/administration & dosage , Tacrolimus/therapeutic use , White People/genetics
20.
Transplantation ; 102(5): 769-774, 2018 05.
Article in English | MEDLINE | ID: mdl-29309379

ABSTRACT

BACKGROUND: The liver simulated allocation model (LSAM) can be used to study likely effects of liver transplant allocation policy changes on organ offers, acceptance, waitlist survival, and posttransplant survival. Implementation of Share 35 in June 2013 allowed for testing how well LSAM predicted actual changes. METHODS: LSAM projections for 1 year of liver transplants before and after the Share 35 policy change were compared with observed data during the same period. Numbers of organs recovered, organ sharing, transplant rates, and waitlist mortality rates (per 100 waitlist years) were evaluated by LSAM and compared with observed data. RESULTS: Candidate, recipient, and donor characteristics in the LSAM cohorts were similar to those in the observed population before and after Share 35. LSAM correctly predicted more accepted organs and fewer discarded organs with Share 35. LSAM also predicted increased regional and national sharing, consistent with observed data, although the magnitude was overestimated. Transplant rates were correctly projected to increase and waitlist death rates to decrease. CONCLUSIONS: Although the absolute number of transplants was underestimated and waitlist deaths overestimated, the direction of change was consistent with observed data. LSAM correctly predicted change in discarded organs, regional and national sharing, waitlist mortality, and transplants after Share 35 implementation.


Subject(s)
Computer Simulation , Decision Support Techniques , Liver Transplantation/methods , Process Assessment, Health Care/methods , Tissue Donors/supply & distribution , Tissue and Organ Procurement/methods , Waiting Lists , Female , Humans , Liver Transplantation/adverse effects , Liver Transplantation/legislation & jurisprudence , Liver Transplantation/mortality , Male , Middle Aged , Policy Making , Postoperative Complications/etiology , Process Assessment, Health Care/legislation & jurisprudence , Risk Factors , Time Factors , Tissue Donors/legislation & jurisprudence , Tissue and Organ Procurement/legislation & jurisprudence , Treatment Outcome , United States , Waiting Lists/mortality
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